Center for Genomic Epidemiology
Contact

Important: We are changing our name! From the new year we will be known as the Global Pathogen Analysis Platform (GPAP). All URLs will remain the same. The site will be unavailable from the 5th of January to the 9th of January (both days inclusive) while the site undergo major maintenance. During the maitenance we will also fix the broken landing page, the PathogenFinder2 service, the contact page, and the 100 MB limit on genepi.dk. Any questions, please contact food-cgehelp@dtu.dk.

ResFinder

ResFinder identifies acquired genes and/or finds chromosomal mutations mediating antimicrobial resistance in total or partial DNA sequence of bacteria.

ResFinder software: (2024-03-22) ResFinder database: (2024-03-22) PointFinder database: (2024-03-08) DisinFinder database: (2023-05-31)

Chromosomal point mutations:

Acquired antimicrobial resistance genes:

Species and input data type:

Disinfectant:

Upload and submit job:

Citations

If you use and/or publish results obtained by the service, please cite as described below. If you use raw reads for your analysis, please cite 1 and 2. If you use assembled data for your analysis, please cite 1 and 3.

 

  • Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AR, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nykäsenoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup F. M.
    (2020). ResFinder 4.0 for predictions of phenotypes from genotypes. Journal of Antimicrobial Chemotherapy, 75(12),3491-3500
  • Clausen PTLC, Aarestrup FM, Lund O.
    (2018). Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinformatics 19(1):307
  • Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL.
    (2009). BLAST+: architecture and applications. BMC Bioinformatics 10(1):421

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