Center for Genomic Epidemiology
Contact

Info: Change your bookmarks! We have a new base URL that is more secure and shorter - https://genepi.dk. Here you will also find our new landingpage, listing all available services and the status of our servers.

Info: Using genepi.dk prevent users from uploading files larger than 100 MB, we are working on a solution. Until then you can still use our old URL http://genepi.food.dtu.dk. We are also aware that our contact form unfortunately does not work at the moment, until fixed you can contact support through food-cgehelp@dtu.dk. We are very sorry about the inconvenience.

ResFinder

ResFinder identifies acquired genes and/or finds chromosomal mutations mediating antimicrobial resistance in total or partial DNA sequence of bacteria.

ResFinder software: (2024-03-22) ResFinder database: (2024-03-22) PointFinder database: (2024-03-08) DisinFinder database: (2023-05-31)

Chromosomal point mutations:

Acquired antimicrobial resistance genes:

Species and input data type:

Disinfectant:

Upload and submit job:

Citations

If you use and/or publish results obtained by the service, please cite as described below. If you use raw reads for your analysis, please cite 1 and 2. If you use assembled data for your analysis, please cite 1 and 3.

 

  • Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, Philippon A, Allesoe RL, Rebelo AR, Florensa AR, Fagelhauer L, Chakraborty T, Neumann B, Werner G, Bender JK, Stingl K, Nguyen M, Coppens J, Xavier BB, Malhotra-Kumar S, Westh H, Pinholt M, Anjum MF, Duggett NA, Kempf I, Nykäsenoja S, Olkkola S, Wieczorek K, Amaro A, Clemente L, Mossong J, Losch S, Ragimbeau C, Lund O, Aarestrup F. M.
    (2020). ResFinder 4.0 for predictions of phenotypes from genotypes. Journal of Antimicrobial Chemotherapy, 75(12),3491-3500
  • Clausen PTLC, Aarestrup FM, Lund O.
    (2018). Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinformatics 19(1):307
  • Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL.
    (2009). BLAST+: architecture and applications. BMC Bioinformatics 10(1):421

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