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Results

ResFinder-4.6.0

Phenotypes

Acquired AMR gene hits

Resistance gene Identity Alignment length/gene length Position in reference Contig or depth Position in contig Phenotype PMID Accession no. Notes
aph(6)-Id 100.00% 837 / 1...837 NODE_56_length_5162_cov_17.9886 1650...2486 ['streptomycin'] 2653965 M28829 Alternative name strB
aph(3'')-Ib 100.00% 803 / 2...804 NODE_56_length_5162_cov_17.9886 848...1650 ['streptomycin'] 9687410 AF024602 Alternative name strA, orfH
aph(3'')-Ib 99.88% 804 / 1...804 NODE_56_length_5162_cov_17.9886 847...1650 ['streptomycin'] 12029529 AF321551 Alternative name strA
aph(3'')-Ib 99.88% 804 / 1...804 NODE_56_length_5162_cov_17.9886 847...1650 ['streptomycin'] unpublished AF313472 Alternative name strA, orfH
aph(3'')-Ib 99.88% 804 / 1...804 NODE_56_length_5162_cov_17.9886 847...1650 ['streptomycin'] 12029529 AF321550 Alternative name strA, orfH
blaOKP-A-5 99.54% 861 / 1...861 NODE_6_length_215026_cov_49.9327 108834...109694 ['unknown beta-lactam'] 15215087 AM051143 Chromosomal
blaTEM-1B 100.00% 861 / 1...861 NODE_50_length_10301_cov_12.9197 2420...3280 ['amoxicillin', 'ampicillin', 'piperacillin', 'ticarcillin', 'cephalothin'] 15388431 AY458016 Class A
fosA6 91.90% 420 / 1...420 NODE_10_length_155017_cov_46.1881 140293...140712 ['fosfomycin'] unpublished KU254579 Natural in K. pneumoniae
fosA 91.90% 420 / 1...420 NODE_10_length_155017_cov_46.1881 140293...140712 ['fosfomycin'] unpublished AFBO01000747
catA1 99.55% 660 / 1...660 NODE_64_length_3087_cov_8.76781 210...869 ['chloramphenicol'] 390403 V00622 Chloramphenicol acetyltransferase
OqxB 95.24% 3153 / 1...3153 NODE_16_length_114395_cov_44.7739 38215...41367 ['ciprofloxacin', 'nalidixic acid', 'trimethoprim', 'chloramphenicol'] 18440636 EU370913
OqxA 94.13% 1176 / 1...1176 NODE_16_length_114395_cov_44.7739 37016...38191 ['ciprofloxacin', 'nalidixic acid', 'trimethoprim', 'chloramphenicol'] 18440636 EU370913 Must be in an operon with oqxB,phenotype differs based on genomic location of the operon PMID 25801572,also nitrofurantoin resistance PMID 26552976. Natural in K. pneumoniae
sul2 100.00% 816 / 1...816 NODE_54_length_5437_cov_17.2585 761...1576 ['sulfamethoxazole'] 11600347 AY034138
tet(D) 100.00% 1185 / 1...1185 NODE_50_length_10301_cov_12.9197 756...1940 ['tetracycline', 'doxycycline'] 12624025 AF467077

Gene Alignments

No gene sequences found in resistant genes.

Chromosomal mutations mediating AMR

Acquired disinfectant resistance gene hits

Resistance gene Identity Alignment length/gene length Position in reference Contig or depth Position in contig Phenotype PMID Accession no. Notes

Gene Alignments

No gene sequences found in resistant genes.

Downloads

Table downloads

Download acquired AMR gene results:

Download Chromosomal point mutation results:

Input Parameters

Input File 1: contigs.fasta

Chromosomal point mutations

Threshold for ID: 90.0 %

Minimum length: 60.0 %

Show unknown mutations: False

Ignore premature stop codons: False

Ignore frameshift indels: False

Acquired antimicrobial resistance genes

Threshold for ID: 90.0 %

Minimum length: 60.0 %

Species and input data type

Selected species: Escherichia coli

Database versions

ResFinder-2.4.0
PointFinder-4.1.1